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    LOC105377563 uncharacterized LOC105377563 [ Homo sapiens (human) ]

    Gene ID: 105377563, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105377563
    Gene description
    uncharacterized LOC105377563
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105377563 in Genome Data Viewer
    Location:
    4q34.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (178813040..178817380)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (182152189..182156475)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene RNA, 5S ribosomal pseudogene 173 Neighboring gene small nucleolar RNA SNORD65 Neighboring gene NANOG hESC enhancer GRCh37_chr4:179674014-179674924 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76488 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:179838787-179839346 Neighboring gene MPRA-validated peak5156 silencer Neighboring gene MPRA-validated peak5157 silencer Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:180086998-180087709 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:180087710-180088420 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:180091265-180091975 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:180385948-180387147 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76514 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_76540 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:180630948-180631634 Neighboring gene NANOG hESC enhancer GRCh37_chr4:180647508-180648029 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15820 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22172 Neighboring gene uncharacterized LOC124900818 Neighboring gene uncharacterized LOC124900623 Neighboring gene uncharacterized LOC124900819

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      178813040..178817380
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_939515.2 RNA Sequence

    2. XR_007058391.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      182152189..182156475
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075192.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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