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    LOC105376005 uncharacterized LOC105376005 [ Homo sapiens (human) ]

    Gene ID: 105376005, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105376005
    Gene description
    uncharacterized LOC105376005
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    9p21.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (29593238..29597306, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (29606690..29610758, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene leucine rich repeat and Ig domain containing 2 Neighboring gene NANOG hESC enhancer GRCh37_chr9:28929045-28929614 Neighboring gene NANOG hESC enhancer GRCh37_chr9:28938893-28939474 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:28970143-28971066 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107603 Neighboring gene microRNA 873 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107631 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19824 Neighboring gene NANOG hESC enhancer GRCh37_chr9:29251246-29251747 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28256 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:29439922-29441121 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:29450054-29451253 Neighboring gene pyruvate dehydrogenase kinase 1 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:29566267-29567466 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:29968493-29968994 Neighboring gene malic enzyme 2 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_107773 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:30075054-30076253 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:30106875-30107376 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:30116712-30117342 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      29593238..29597306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_929535.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      29606690..29610758 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080175.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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