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    LOC107984219 uncharacterized LOC107984219 [ Homo sapiens (human) ]

    Gene ID: 107984219, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107984219
    Gene description
    uncharacterized LOC107984219
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 8.3), gall bladder (RPKM 6.8) and 25 other tissues See more
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    Genomic context

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    Location:
    10p11.22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (31922852..32020399)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (31954211..32049032)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31983575-31984136 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:31984137-31984698 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3242 Neighboring gene macrophage enriched lincRNA repressor of IFN-gamma signaling Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32048354-32049250 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3243 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:32054478-32055115 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:32062977-32063974 Neighboring gene Rho GTPase activating protein 12 Neighboring gene MPRA-validated peak921 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:32189989-32190489 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2280 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr10:32229391-32230590 Neighboring gene high mobility group box 1 pseudogene 7 Neighboring gene uncharacterized LOC105376485 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:32291606-32292421 Neighboring gene ribosomal protein L34 pseudogene 19 Neighboring gene RNA, 7SL, cytoplasmic 825, pseudogene Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:32306942-32308141 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:32337050-32338249 Neighboring gene kinesin family member 5B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2281 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32411889-32412388 Neighboring gene ribosomal protein S4X pseudogene 11 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:32428165-32428894 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2282 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2283 Neighboring gene Sharpr-MPRA regulatory region 14665 Neighboring gene RNA, U7 small nuclear 22 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      31922852..32020399
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001747415.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      31954211..32049032
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007080805.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases