U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from dbVar

    • Showing Current items.

    LINC00871 long intergenic non-protein coding RNA 871 [ Homo sapiens (human) ]

    Gene ID: 100506412, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Official Symbol
    LINC00871provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 871provided by HGNC
    Primary source
    HGNC:HGNC:47038
    See related
    Ensembl:ENSG00000258700 AllianceGenome:HGNC:47038
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    14q21.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (46064159..46501903)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (40256664..40700717)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (46533362..46971106)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370478 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:46254136-46254804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:46280279-46280908 Neighboring gene uncharacterized LOC105378177 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8307 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:46357483-46358111 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:46358112-46358739 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:46790472-46791404 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:46791405-46792337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:46846591-46847091 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr14:46850488-46851388 Neighboring gene uncharacterized LOC124903309 Neighboring gene uncharacterized LOC105370480 Neighboring gene uncharacterized LOC105370481 Neighboring gene MPRA-validated peak2148 silencer Neighboring gene ribosomal protein L10 like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Creation of genome-wide protein expression libraries using random activation of gene expression. Harrington JJ, et al. Nat Biotechnol, 2001 May. PMID 11329013
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_102699.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks multiple 5' exons and contains two alternate 5' exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL512414

    2. NR_102700.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks multiple 5' exons and contains an alternate 5' exon, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL512414

    3. NR_102701.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL161664, AL355099, AL512414
      Related
      ENST00000556886.1

    4. NR_102702.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks two internal exons, resulting in a shorter transcript, compared to variant 1.
      Source sequence(s)
      AL161664, AL512414
      Related
      ENST00000656720.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      46064159..46501903
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_021160014.1 Reference GRCh38.p14 PATCHES

      Range
      124773..198857
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      40256664..40700717
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases