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    LINC02055 long intergenic non-protein coding RNA 2055 [ Homo sapiens (human) ]

    Gene ID: 107986980, updated on 10-Oct-2023

    Summary

    Official Symbol
    LINC02055provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2055provided by HGNC
    Primary source
    HGNC:HGNC:52895
    See related
    Ensembl:ENSG00000254101 AllianceGenome:HGNC:52895
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    Location:
    8q24.23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (136530798..136897601)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (137646895..138013382)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (137543041..137909844)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375775 Neighboring gene Sharpr-MPRA regulatory region 1033 Neighboring gene NANOG hESC enhancer GRCh37_chr8:137348736-137349237 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19570 Neighboring gene uncharacterized LOC124900255 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28024 Neighboring gene meiotic recombination hotspot E Neighboring gene NANOG hESC enhancer GRCh37_chr8:137750707-137751235 Neighboring gene uncharacterized LOC124902073 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr8:138052445-138053644 Neighboring gene uncharacterized LOC107986905 Neighboring gene RNA, U6 small nuclear 144, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_147196.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC021621, BQ226050
      Related
      ENST00000524346.6

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      136530798..136897601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      137646895..138013382
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)