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    LOC105372088 uncharacterized LOC105372088 [ Homo sapiens (human) ]

    Gene ID: 105372088, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105372088
    Gene description
    uncharacterized LOC105372088
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC105372088 in Genome Data Viewer
    Location:
    18q12.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (43810687..43933384, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (44001593..44123920, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:40323669-40324335 Neighboring gene Ras like without CAAX 2 Neighboring gene synaptotagmin 4 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:41065893-41067092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:41168512-41169151 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:41339915-41340500 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:41426037-41426853 Neighboring gene uncharacterized LOC105372087 Neighboring gene RNA, U6 small nuclear 443, pseudogene Neighboring gene Sharpr-MPRA regulatory region 9153 Neighboring gene RNA, 5S ribosomal pseudogene 455 Neighboring gene inhibitor of Bruton tyrosine kinase pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      43810687..43933384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_935415.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      44001593..44123920 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007088362.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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