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    LOC107985172 uncharacterized LOC107985172 [ Homo sapiens (human) ]

    Gene ID: 107985172, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107985172
    Gene description
    uncharacterized LOC107985172
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    18q23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (77512256..77589073)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (77745082..77821961)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900408 Neighboring gene Sharpr-MPRA regulatory region 926 Neighboring gene B double prime 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75238409-75239170 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75242411-75242935 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:75242936-75243459 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:75256898-75257093 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75300889-75301390 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13535 Neighboring gene DnaJ heat shock protein family (Hsp40) member C8 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9565 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:75370231-75371192 Neighboring gene uncharacterized LOC107985129

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      77512256..77589073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001753512.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      77745082..77821961
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007088597.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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