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    LOC107986223 uncharacterized LOC107986223 [ Homo sapiens (human) ]

    Gene ID: 107986223, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC107986223
    Gene description
    uncharacterized LOC107986223
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC107986223 in Genome Data Viewer
    Location:
    4p15.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (32437068..32560466, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (32412025..32535432, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102723846 Neighboring gene long intergenic non-protein coding RNA 2353 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32398011-32398729 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78431 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_78443 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:32685598-32686457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:32749967-32750466 Neighboring gene MPRA-validated peak5018 silencer Neighboring gene uncharacterized LOC124900831 Neighboring gene NANOG hESC enhancer GRCh37_chr4:32911350-32911851 Neighboring gene MAPRE1 pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      32437068..32560466 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001741503.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      32412025..32535432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075307.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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