U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from dbVar

    • Showing Current items.

    LOC105377436 uncharacterized LOC105377436 [ Homo sapiens (human) ]

    Gene ID: 105377436, updated on 10-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105377436
    Gene description
    uncharacterized LOC105377436
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105377436 in Genome Data Viewer
    Location:
    4q28.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (134579989..134640574)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (137902454..137963197)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:135286515-135287714 Neighboring gene pescadillo ribosomal biogenesis factor 1 pseudogene 1 Neighboring gene long intergenic non-protein coding RNA 2462 Neighboring gene Sharpr-MPRA regulatory region 8780 Neighboring gene Sharpr-MPRA regulatory region 6313 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:135545237-135545975 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:135548341-135548841 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:135547840-135548340 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:135604303-135604886 Neighboring gene NANOG hESC enhancer GRCh37_chr4:135615182-135615683 Neighboring gene NANOG hESC enhancer GRCh37_chr4:135835285-135835838 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:135837792-135838991 Neighboring gene uncharacterized LOC105377438 Neighboring gene uncharacterized LOC105377437 Neighboring gene cytochrome b-c1 complex subunit 8-like Neighboring gene ribosomal protein S2 pseudogene 27

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      134579989..134640574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_939214.2 RNA Sequence

    2. XR_939211.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      137902454..137963197
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007074300.1 RNA Sequence

    2. XR_007074299.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases