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    SOD1-DT SOD1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 102724449, updated on 17-Sep-2024

    Summary

    Official Symbol
    SOD1-DTprovided by HGNC
    Official Full Name
    SOD1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55683
    See related
    AllianceGenome:HGNC:55683
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See SOD1-DT in Genome Data Viewer
    Location:
    21q22.11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (31653587..31660024, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (30021570..30028008, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (33025900..33032337, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985488 Neighboring gene F-box and WD repeat domain containing 11 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:33013320-33013537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:33026156-33026706 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:33026707-33027255 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13241 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18354 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33033348-33033857 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33033858-33034366 Neighboring gene small nucleolar RNA SNORA81 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:33044406-33044964 Neighboring gene superoxide dismutase 1 Neighboring gene SR-related CTD associated factor 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:33078369-33078870 Neighboring gene high mobility group nucleosome binding domain 1 pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187558.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CP068257

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      31653587..31660024 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      30021570..30028008 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)