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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001267803.2 → NP_001254732.1 proteasomal ATPase-associated factor 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes longest protein (isoform 1). Variants 1, 2, and 3 encode the same isoform (1).
- Source sequence(s)
-
AF087895, AP002770, BC028628, DC354686
- Consensus CDS
-
CCDS58157.1
- Related
- ENSP00000438124.1, ENST00000536003.5
- Conserved Domains (3) summary
-
- COG2319
Location:40 → 375
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 115
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:72 → 321
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001267804.2 → NP_001254733.1 proteasomal ATPase-associated factor 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) contains an alternate splicing structure in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same isoform (1).
- Source sequence(s)
-
AF087895, AP002770, CD243380, DC354686
- Consensus CDS
-
CCDS58157.1
- Conserved Domains (3) summary
-
- COG2319
Location:40 → 375
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 115
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:72 → 321
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001267805.2 → NP_001254734.1 proteasomal ATPase-associated factor 1 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an alternate splicing structure in the 5' UTR, compared to variant 1. Variants 1, 2, and 3 encode the same isoform (1).
- Source sequence(s)
-
AF087895, AK021910, AP002770
- Consensus CDS
-
CCDS58157.1
- Related
- ENSP00000441494.1, ENST00000544552.5
- Conserved Domains (3) summary
-
- COG2319
Location:40 → 375
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:78 → 115
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:72 → 321
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001267806.2 → NP_001254735.1 proteasomal ATPase-associated factor 1 isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks an internal exon, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (3) has a shorter N-terminus compared to isoform 1.
- Source sequence(s)
-
AF087895, AK298258, AP002770
- Consensus CDS
-
CCDS58158.1
- UniProtKB/Swiss-Prot
-
Q9BRP4
- Related
- ENSP00000441333.1, ENST00000541951.5
- Conserved Domains (3) summary
-
- COG2319
Location:2 → 277
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:23 → 59
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:1 → 223
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_001363556.2 → NP_001350485.1 proteasomal ATPase-associated factor 1 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AK309133, AP002770
- Consensus CDS
-
CCDS86227.1
- UniProtKB/TrEMBL
-
F5H0C4
- Related
- ENSP00000438071.1, ENST00000544909.5
- Conserved Domains (2) summary
-
- sd00039
Location:96 → 133
- 7WD40; WD40 repeat [structural motif]
- cl25539
Location:90 → 339
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
-
NM_025155.3 → NP_079431.1 proteasomal ATPase-associated factor 1 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks an exon in the 5' region, and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (2) has a distinct N-terminus and is longer than isoform 1.
- Source sequence(s)
-
AF087895, AK021910, AP002770
- Consensus CDS
-
CCDS8226.1
- UniProtKB/Swiss-Prot
- A6NDR5, B4DPB0, B7ZAS9, Q4G165, Q53HS9, Q7Z500, Q8TBU6, Q9BRP4, Q9HAB6
- Related
- ENSP00000311665.4, ENST00000310571.8
- Conserved Domains (3) summary
-
- COG2319
Location:57 → 392
- WD40; WD40 repeat [General function prediction only]
- sd00039
Location:95 → 132
- 7WD40; WD40 repeat [structural motif]
- cl02567
Location:89 → 338
- WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
73876699..73931114
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047427639.1 → XP_047283595.1 proteasomal ATPase-associated factor 1 isoform X1
RNA
-
XR_007062508.1 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
73805848..73860264
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054370044.1 → XP_054226019.1 proteasomal ATPase-associated factor 1 isoform X1
RNA
-
XR_008488461.1 RNA Sequence