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    Mrps33 mitochondrial ribosomal protein S33 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 296995, updated on 19-Sep-2024

    Summary

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    Official Symbol
    Mrps33provided by RGD
    Official Full Name
    mitochondrial ribosomal protein S33provided by RGD
    Primary source
    RGD:1309217
    See related
    AllianceGenome:RGD:1309217
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPS33 (mitochondrial ribosomal protein S33). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 250.1), Heart (RPKM 209.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Mrps33 in Genome Data Viewer
    Location:
    4q23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (69563501..69572317, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (68596729..68605547, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (67606971..67616056, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486574 Neighboring gene uncharacterized LOC134486760 Neighboring gene uncharacterized LOC120102257 Neighboring gene uncharacterized LOC103692103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    small ribosomal subunit protein mS33
    Names
    28S ribosomal protein S33, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001047863.1 → NP_001041328.1  small ribosomal subunit protein mS33

      See identical proteins and their annotated locations for NP_001041328.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ480753
      UniProtKB/TrEMBL
      F7EUA0, Q0ZFS4
      Conserved Domains (1) summary
      pfam08293
      Location:5 → 95
      MRP-S33; Mitochondrial ribosomal subunit S27

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      69563501..69572317 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006236305.5 → XP_006236367.1  small ribosomal subunit protein mS33 isoform X1

      See identical proteins and their annotated locations for XP_006236367.1

      UniProtKB/TrEMBL
      F7EUA0, Q0ZFS4
      Conserved Domains (1) summary
      pfam08293
      Location:5 → 95
      MRP-S33; Mitochondrial ribosomal subunit S27

    RNA

    1. XR_005503180.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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