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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_030359.2 RefSeqGene
- Range
-
4983..97433
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001248002.3 → NP_001234931.1 basic helix-loop-helix ARNT-like protein 2 isoform 2
See identical proteins and their annotated locations for NP_001234931.1
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS58219.1
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000312247.5, ENST00000311001.9
- Conserved Domains (4) summary
-
- cd00130
Location:356 → 454
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:95 → 147
- HLH; Helix-loop-helix DNA-binding domain
- pfam00989
Location:167 → 273
- PAS; PAS fold
- pfam14598
Location:356 → 458
- PAS_11; PAS domain
-
NM_001248003.3 → NP_001234932.1 basic helix-loop-helix ARNT-like protein 2 isoform 3
See identical proteins and their annotated locations for NP_001234932.1
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS58221.1
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000379238.2, ENST00000395901.6
- Conserved Domains (3) summary
-
- cd00130
Location:155 → 250
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:73 → 124
- HLH; Helix-loop-helix DNA-binding domain
- cl25986
Location:333 → 435
- PAS_3; PAS fold
-
NM_001248004.3 → NP_001234933.1 basic helix-loop-helix ARNT-like protein 2 isoform 4
See identical proteins and their annotated locations for NP_001234933.1
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS58220.1
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000261178.5, ENST00000261178.9
- Conserved Domains (3) summary
-
- cd00130
Location:144 → 239
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:62 → 113
- HLH; Helix-loop-helix DNA-binding domain
- cl25986
Location:322 → 424
- PAS_3; PAS fold
-
NM_001248005.3 → NP_001234934.1 basic helix-loop-helix ARNT-like protein 2 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS58222.1
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000438545.1, ENST00000546179.5
- Conserved Domains (4) summary
-
- cd00083
Location:72 → 124
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cd00130
Location:333 → 431
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00989
Location:144 → 250
- PAS; PAS fold
- pfam14598
Location:333 → 435
- PAS_11; PAS domain
-
NM_001394524.1 → NP_001381453.1 basic helix-loop-helix ARNT-like protein 2 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (3) summary
-
- cd00130
Location:203 → 298
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- cd11469
Location:119 → 178
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
- pfam14598
Location:381 → 483
- PAS_11; PAS domain
-
NM_001394525.1 → NP_001381454.1 basic helix-loop-helix ARNT-like protein 2 isoform 7
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (3) summary
-
- cd00130
Location:189 → 284
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- cd11469
Location:106 → 164
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
- pfam14598
Location:367 → 469
- PAS_11; PAS domain
-
NM_001394526.1 → NP_001381455.1 basic helix-loop-helix ARNT-like protein 2 isoform 8
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS91666.1
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000442438.1, ENST00000544915.5
- Conserved Domains (3) summary
-
- cd00130
Location:158 → 253
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- cd11469
Location:74 → 133
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
- pfam14598
Location:336 → 438
- PAS_11; PAS domain
-
NM_001394527.1 → NP_001381456.1 basic helix-loop-helix ARNT-like protein 2 isoform 9
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (2) summary
-
- cd00130
Location:322 → 420
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- cd11469
Location:61 → 119
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
-
NM_001394528.1 → NP_001381457.1 basic helix-loop-helix ARNT-like protein 2 isoform 10
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (2) summary
-
- cd11469
Location:72 → 130
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
- pfam14598
Location:302 → 404
- PAS_11; PAS domain
-
NM_001394529.1 → NP_001381458.1 basic helix-loop-helix ARNT-like protein 2 isoform 11
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (2) summary
-
- cd00130
Location:291 → 389
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- cd11469
Location:61 → 119
- bHLH-PAS_ARNTL2_PASD9; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 2 (ARNTL2) and similar proteins
-
NM_020183.6 → NP_064568.3 basic helix-loop-helix ARNT-like protein 2 isoform 1
See identical proteins and their annotated locations for NP_064568.3
Status: REVIEWED
- Source sequence(s)
-
AC068794, AC092829
- Consensus CDS
-
CCDS8712.1
- UniProtKB/Swiss-Prot
- B7Z429, F5H402, Q8WYA1, Q8WYA2, Q8WYA3, Q8WYA4, Q96J63, Q9H2M4, Q9NS70, Q9NYQ4, Q9NYQ5
- UniProtKB/TrEMBL
-
H0Y5R1
- Related
- ENSP00000266503.5, ENST00000266503.10
- Conserved Domains (4) summary
-
- cd00130
Location:370 → 468
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:109 → 161
- HLH; Helix-loop-helix DNA-binding domain
- pfam00989
Location:181 → 287
- PAS; PAS fold
- pfam14598
Location:370 → 472
- PAS_11; PAS domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000012.12 Reference GRCh38.p14 Primary Assembly
- Range
-
27332836..27425286
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011520768.3 → XP_011519070.1 basic helix-loop-helix ARNT-like protein 2 isoform X1
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (3) summary
-
- cd00130
Location:350 → 448
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:120 → 172
- HLH; Helix-loop-helix DNA-binding domain
- pfam14598
Location:350 → 452
- PAS_11; PAS domain
-
XM_011520769.3 → XP_011519071.1 basic helix-loop-helix ARNT-like protein 2 isoform X2
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (4) summary
-
- cd00130
Location:347 → 445
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00010
Location:86 → 138
- HLH; Helix-loop-helix DNA-binding domain
- pfam00989
Location:158 → 264
- PAS; PAS fold
- pfam14598
Location:347 → 449
- PAS_11; PAS domain
-
XM_047429173.1 → XP_047285129.1 basic helix-loop-helix ARNT-like protein 2 isoform X5
-
XM_047429171.1 → XP_047285127.1 basic helix-loop-helix ARNT-like protein 2 isoform X3
-
XM_047429172.1 → XP_047285128.1 basic helix-loop-helix ARNT-like protein 2 isoform X4
-
XM_017019668.1 → XP_016875157.1 basic helix-loop-helix ARNT-like protein 2 isoform X6
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (4) summary
-
- cd00083
Location:6 → 59
- HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
- cd00130
Location:268 → 366
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00989
Location:79 → 185
- PAS; PAS fold
- pfam14598
Location:268 → 370
- PAS_11; PAS domain
-
XM_047429174.1 → XP_047285130.1 basic helix-loop-helix ARNT-like protein 2 isoform X9
-
XM_006719114.3 → XP_006719177.1 basic helix-loop-helix ARNT-like protein 2 isoform X8
- UniProtKB/TrEMBL
-
H0Y5R1
- Conserved Domains (4) summary
-
- smart00353
Location:1 → 39
- HLH; helix loop helix domain
- cd00130
Location:248 → 346
- PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
- pfam00989
Location:59 → 165
- PAS; PAS fold
- pfam14598
Location:248 → 350
- PAS_11; PAS domain
-
XM_017019669.1 → XP_016875158.1 basic helix-loop-helix ARNT-like protein 2 isoform X7
- UniProtKB/TrEMBL
-
H0Y5R1
Alternate T2T-CHM13v2.0
Genomic
-
NC_060936.1 Alternate T2T-CHM13v2.0
- Range
-
27204471..27296954
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054372594.1 → XP_054228569.1 basic helix-loop-helix ARNT-like protein 2 isoform X1
-
XM_054372595.1 → XP_054228570.1 basic helix-loop-helix ARNT-like protein 2 isoform X2
-
XM_054372598.1 → XP_054228573.1 basic helix-loop-helix ARNT-like protein 2 isoform X5
-
XM_054372596.1 → XP_054228571.1 basic helix-loop-helix ARNT-like protein 2 isoform X3
-
XM_054372597.1 → XP_054228572.1 basic helix-loop-helix ARNT-like protein 2 isoform X4
-
XM_054372599.1 → XP_054228574.1 basic helix-loop-helix ARNT-like protein 2 isoform X6
-
XM_054372602.1 → XP_054228577.1 basic helix-loop-helix ARNT-like protein 2 isoform X9
-
XM_054372601.1 → XP_054228576.1 basic helix-loop-helix ARNT-like protein 2 isoform X8
-
XM_054372600.1 → XP_054228575.1 basic helix-loop-helix ARNT-like protein 2 isoform X7