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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001281431.2 → NP_001268360.1 kallikrein-8 isoform 5
See identical proteins and their annotated locations for NP_001268360.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5, also known as T5) lacks an alternate exon in the 5' coding region and initiates translation at a downstream start codon, compared to variant 2. It encodes isoform 5 which is shorter at the N-terminus, compared to isoform 2. This variant is based on data in PMID: 20360129.
- Source sequence(s)
-
AA587273, AB009849, AY359036
- Consensus CDS
-
CCDS74433.1
- UniProtKB/TrEMBL
-
A0A0A0MQY9
- Related
- ENSP00000291726.8, ENST00000291726.11
- Conserved Domains (1) summary
-
- smart00020
Location:1 → 131
- Tryp_SPc; Trypsin-like serine protease
-
NM_007196.4 → NP_009127.1 kallikrein-8 isoform 1 preproprotein
See identical proteins and their annotated locations for NP_009127.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1, also known as T1) uses an alternate splice site in the 5' coding region, compared to variant 2. It encodes isoform 1, which is shorter than isoform 2.
- Source sequence(s)
-
AA587273, AY359036
- Consensus CDS
-
CCDS12813.1
- UniProtKB/Swiss-Prot
- O60259, Q5V9X1, Q5V9X2, Q8IW69, Q9HCB3, Q9NR68, Q9NR69, Q9UIL9, Q9UQ47
- UniProtKB/TrEMBL
-
A0A1R3UD89
- Related
- ENSP00000512260.1, ENST00000695909.1
- Conserved Domains (1) summary
-
- smart00020
Location:32 → 252
- Tryp_SPc; Trypsin-like serine protease
-
NM_144505.3 → NP_653088.1 kallikrein-8 isoform 2 precursor
See identical proteins and their annotated locations for NP_653088.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2, also known as T2) represents the longest transcript and encodes the longest isoform (2).
- Source sequence(s)
-
AA587273, AB008927, AF095742
- Consensus CDS
-
CCDS42600.1
- UniProtKB/TrEMBL
-
A0A1R3UD89
- Related
- ENSP00000375682.1, ENST00000391806.6
- Conserved Domains (2) summary
-
- smart00020
Location:77 → 297
- Tryp_SPc; Trypsin-like serine protease
- cd00190
Location:78 → 300
- Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
-
NM_144506.3 → NP_653089.1 kallikrein-8 isoform 3 precursor
See identical proteins and their annotated locations for NP_653089.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3, also known as T3) lacks two alternate exons in the coding region, compared to variant 2. It encodes isoform 3, which lacks an in-frame segment and is shorter than isoform 2.
- Source sequence(s)
-
AA587273, AY359036, BM845575
- Consensus CDS
-
CCDS12814.1
- UniProtKB/TrEMBL
-
A0A2H4GDC0
- Related
- ENSP00000341555.3, ENST00000347619.8
- Conserved Domains (1) summary
-
- smart00020
Location:25 → 111
- Tryp_SPc; Trypsin-like serine protease
-
NM_144507.3 → NP_653090.1 kallikrein-8 isoform 4
See identical proteins and their annotated locations for NP_653090.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4, also known as T4) lacks three exons in the coding region, which results in a frameshift and an early stop codon, compared to variant 2. The encoded isoform (4) is shorter and has a distinct C-terminus, compared to isoform 2. This variant is based on data in PMID: 11309326 and 20360129.
- Source sequence(s)
-
AA320217, AA587273, AY359036
- Consensus CDS
-
CCDS12815.1
- UniProtKB/Swiss-Prot
-
O60259
- Related
- ENSP00000325072.5, ENST00000320838.9
RNA
-
NR_104008.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6, also known as T6) lacks an alternate internal exon, compared to variant 2. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 2, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). This variant is based on data in PMID: 20360129.
- Source sequence(s)
-
AA587273, AB008390, AY359036
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000019.10 Reference GRCh38.p14 Primary Assembly
- Range
-
50996008..51001604 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060943.1 Alternate T2T-CHM13v2.0
- Range
-
54084477..54090075 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)