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    AGPAT4-IT1 AGPAT4 intronic transcript 1 [ Homo sapiens (human) ]

    Gene ID: 79992, updated on 17-Sep-2024

    Summary

    Official Symbol
    AGPAT4-IT1provided by HGNC
    Official Full Name
    AGPAT4 intronic transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:20988
    See related
    AllianceGenome:HGNC:20988
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C6orf59; NCRNA00241
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    Genomic context

    See AGPAT4-IT1 in Genome Data Viewer
    Location:
    6q26
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (161160114..161161982, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (162518519..162520387, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (161581146..161583014, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:161412339-161413208 Neighboring gene Sharpr-MPRA regulatory region 85 Neighboring gene NANOG hESC enhancer GRCh37_chr6:161422459-161422960 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25409 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25410 Neighboring gene MAP3K4 antisense RNA 1 Neighboring gene MPRA-validated peak6300 silencer Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:161500530-161501729 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25411 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:161549261-161550460 Neighboring gene Sharpr-MPRA regulatory region 15502 Neighboring gene mitogen-activated protein kinase kinase kinase 4 Neighboring gene uncharacterized LOC124901455 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:161581716-161582274 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161582962-161583462 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:161579309-161579810 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:161579811-161580310 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161586885-161587594 Neighboring gene NANOG hESC enhancer GRCh37_chr6:161589077-161589672 Neighboring gene Sharpr-MPRA regulatory region 12533 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25412 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:161606735-161607934 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:161644168-161644410 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:161647413-161647718 Neighboring gene Sharpr-MPRA regulatory region 4197 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:161713123-161713635 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:161724387-161725586 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:161736020-161737219 Neighboring gene uncharacterized LOC105378094 Neighboring gene uncharacterized LOC124901457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:161775686-161776186 Neighboring gene parkin RBR E3 ubiquitin protein ligase

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • AGPAT4 intronic transcript 1 (non-protein coding)

    Clone Names

    • FLJ23112

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024277.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL109942

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      161160114..161161982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      162518519..162520387 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_024929.1: Suppressed sequence

      Description
      NM_024929.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.