U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LITATS1 lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1 [ Homo sapiens (human) ]

    Gene ID: 728431, updated on 17-Sep-2024

    Summary

    Official Symbol
    LITATS1provided by HGNC
    Official Full Name
    lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1provided by HGNC
    Primary source
    HGNC:HGNC:49453
    See related
    Ensembl:ENSG00000233621 AllianceGenome:HGNC:49453
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC01137; ZC3H12A-DT
    Expression
    Ubiquitous expression in prostate (RPKM 2.9), gall bladder (RPKM 2.8) and 25 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LITATS1 in Genome Data Viewer
    Location:
    1p34.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (37454879..37474443, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (37319643..37339197, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (37920480..37940044, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ribosomal protein S29 pseudogene 6 Neighboring gene uncharacterized LOC107984942 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:37827606-37827793 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_7809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37876230-37876730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37876731-37877231 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:37916959-37918158 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:37920349-37921548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 671 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 767 Neighboring gene H3K4me1 hESC enhancers GRCh37_chr1:37944526-37945352 and GRCh37_chr1:37945353-37946179 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 769 Neighboring gene zinc finger CCCH-type containing 12A Neighboring gene microRNA 6732 Neighboring gene MYST/Esa1 associated factor 6 Neighboring gene microRNA 5581

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • ZC3H12A divergent transcript
    • long intergenic non-protein coding RNA 1137

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038842.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL449284, BM923085, CK300727, DA727774
      Related
      ENST00000424989.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      37454879..37474443 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      37319643..37339197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)