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    FER1L6-AS2 FER1L6 antisense RNA 2 [ Homo sapiens (human) ]

    Gene ID: 157376, updated on 17-Sep-2024

    Summary

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    Official Symbol
    FER1L6-AS2provided by HGNC
    Official Full Name
    FER1L6 antisense RNA 2provided by HGNC
    Primary source
    HGNC:HGNC:26534
    See related
    Ensembl:ENSG00000253868 AllianceGenome:HGNC:26534
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C8orf78
    Expression
    Biased expression in stomach (RPKM 3.2), testis (RPKM 2.8) and 6 other tissues See more
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    Genomic context

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    See FER1L6-AS2 in Genome Data Viewer
    Location:
    8q24.13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (124046071..124171522, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (125178461..125303975, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (125058312..125183763, complement)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902014 Neighboring gene fer-1 like family member 6 Neighboring gene Sharpr-MPRA regulatory region 15371 Neighboring gene FER1L6 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 12119 Neighboring gene neuropilin and tolloid like 2 pseudogene Neighboring gene ARF GTPase 1 pseudogene 3 Neighboring gene uncharacterized LOC101927588 Neighboring gene uncharacterized LOC124902015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27876 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27877 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27878 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19507 Neighboring gene Sharpr-MPRA regulatory region 14070 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27879 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27880 Neighboring gene RNA, U6 small nuclear 756, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • FER1L6 antisense RNA 2 (non-protein coding)

    Clone Names

    • FLJ32770, MGC126551, MGC126555

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103547.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC100871, AI425048, AK057332
      Related
      ENST00000520031.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      124046071..124171522 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      125178461..125303975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_182525.1: Suppressed sequence

      Description
      NM_182525.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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