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    LINC00639 long intergenic non-protein coding RNA 639 [ Homo sapiens (human) ]

    Gene ID: 283547, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00639provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 639provided by HGNC
    Primary source
    HGNC:HGNC:27502
    See related
    Ensembl:ENSG00000259070 AllianceGenome:HGNC:27502
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Broad expression in brain (RPKM 1.6), fat (RPKM 1.5) and 16 other tissues See more
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    Genomic context

    See LINC00639 in Genome Data Viewer
    Location:
    14q21.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (38749339..38916882, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (32938012..33105550, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (39218543..39386086, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene general transcription factor IIH subunit 3 pseudogene Neighboring gene NANOG hESC enhancer GRCh37_chr14:39098611-39099121 Neighboring gene keratin 8 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr14:39277742-39278941 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:39307339-39307875 Neighboring gene uncharacterized LOC105370457 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr14:39401304-39402503 Neighboring gene uncharacterized LOC102723516 Neighboring gene RIPPLY3 pseudogene 1 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486106-39486616 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:39486617-39487127 Neighboring gene Sharpr-MPRA regulatory region 2779 Neighboring gene SEC23 homolog A, COPII coat complex component Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5684 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5685 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5686 Neighboring gene SEC23A antisense RNA 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_039982.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK125018, AK127318, AL132994, BC035119
      Related
      ENST00000554732.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      38749339..38916882 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      32938012..33105550 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)