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    MIR1-1HG MIR1-1 host gene [ Homo sapiens (human) ]

    Gene ID: 128826, updated on 17-Sep-2024

    Summary

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    Official Symbol
    MIR1-1HGprovided by HGNC
    Official Full Name
    MIR1-1 host geneprovided by HGNC
    Primary source
    HGNC:HGNC:16159
    See related
    Ensembl:ENSG00000174407 AllianceGenome:HGNC:16159
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C20orf166; MIR133A2HG
    Expression
    Biased expression in heart (RPKM 1.7), prostate (RPKM 1.3) and 3 other tissues See more
    Orthologs
    all
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    Genomic context

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    See MIR1-1HG in Genome Data Viewer
    Location:
    20q13.33
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (62550453..62570764)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (64348970..64369291)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (61147660..61167971)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18203 Neighboring gene uncharacterized LOC124904947 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071135-61071640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61071641-61072147 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61075123-61075623 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18204 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61086501-61087310 Neighboring gene uncharacterized LOC105376995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61147747-61148622 Neighboring gene cardiomyocyte maturation associated lncRNA Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61153927-61154798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61155669-61156540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158329-61158846 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61158847-61159365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61159366-61159883 Neighboring gene microRNA 1-1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61166511-61167012 Neighboring gene microRNA 133a-2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13113 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18205 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61172911-61173412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61173413-61173912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:61175357-61176308 Neighboring gene ribosomal protein L7 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61186037-61186544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61188976-61189476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:61189477-61189977 Neighboring gene long intergenic non-protein coding RNA 2970

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of 4370 expressed sequence tags from a 3'-end-specific cDNA library of human skeletal muscle by DNA sequencing and filter hybridization. Lanfranchi G, et al. Genome Res, 1996 Jan. PMID 8681137
    2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Eeles RA, et al. Nat Genet, 2013 Apr. PMID 23535732, Free PMC Article
    3. The DNA sequence and comparative analysis of human chromosome 20. Deloukas P, et al. Nature, 2001 Dec 20-27. PMID 11780052
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    Other Names

    • MIR1-1 host gene protein
    • MIR133A2 host
    • uncharacterized protein C20orf166

    Clone Names

    • FLJ32423, MGC129808

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_171007.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL449263
      Related
      ENST00000624914.4

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      62550453..62570764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      64348970..64369291
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001302812.2: Suppressed sequence

      Description
      NM_001302812.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.

    2. NM_178463.4: Suppressed sequence

      Description
      NM_178463.4: This RefSeq was removed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9H1L0.1 GenPept UniProtKB/Swiss-Prot:Q9H1L0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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