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    LINC01094 long intergenic non-protein coding RNA 1094 [ Homo sapiens (human) ]

    Gene ID: 100505702, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01094provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1094provided by HGNC
    Primary source
    HGNC:HGNC:49219
    See related
    AllianceGenome:HGNC:49219
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTEPHA1
    Expression
    Biased expression in brain (RPKM 6.2), placenta (RPKM 2.2) and 7 other tissues See more
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    Genomic context

    See LINC01094 in Genome Data Viewer
    Location:
    4q21.21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (78645994..78684501)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (81981571..82020092)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (79567148..79605655)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900721 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21645 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21646 Neighboring gene small nucleolar RNA U13 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr4:79566785-79567984 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 13 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1973 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1974 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:79627314-79627946 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr4:79635971-79636917 Neighboring gene uncharacterized LOC101928893 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:79639668-79640239 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:79640240-79640810 Neighboring gene Sharpr-MPRA regulatory region 1360 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1978 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:79643097-79643668 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1979 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21649 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21650 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21651 Neighboring gene ribosomal protein S21 pseudogene 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Association of common variants in TNFRSF13B, TNFSF13, and ANXA3 with serum levels of non-albumin protein and immunoglobulin isotypes in Japanese.
    EBI GWAS Catalog

    General gene information

    Other Names

    • chronic thromboembolic pulmonary hypertension RNA
    • lncRNA CTEPH-associated 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038303.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AC112253, AK130099, BC040182, DA199752
    2. NR_038304.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AC112253, AK124062, BC040182, DA199752
    3. NR_038305.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AC112253, BC040182, DA199752
    4. NR_038306.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks two internal exons, compared to variant 1.
      Source sequence(s)
      AC112253, AK057213, BC040182, DA199752
    5. NR_038307.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks two internal exons, compared to variant 1.
      Source sequence(s)
      AC112253, BC040182, CB155346, DA199752
    6. NR_038308.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) lacks two internal exons and uses an alternate splice site, compared to variant 1.
      Source sequence(s)
      AC112253, BC040182, DA199752

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      78645994..78684501
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      81981571..82020092
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)