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    Prok2 prokineticin 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 192206, updated on 2-Nov-2024

    Summary

    Official Symbol
    Prok2provided by RGD
    Official Full Name
    prokineticin 2provided by RGD
    Primary source
    RGD:620280
    See related
    EnsemblRapid:ENSRNOG00000010898 AllianceGenome:RGD:620280
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Bv8; PK2
    Summary
    Enables G protein-coupled receptor binding activity. Predicted to be involved in several processes, including angiogenesis; endothelial cell proliferation; and positive regulation of smooth muscle contraction. Predicted to act upstream of or within circadian rhythm. Predicted to be located in extracellular region. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 4 with or without anosmia. Orthologous to human PROK2 (prokineticin 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 59.2), Spleen (RPKM 8.6) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Prok2 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (133903210..133918126, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (132346681..132361754, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (132157556..132171244, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 27 Neighboring gene immediate early response 3 interacting protein 1, pseudogene 1 Neighboring gene uncharacterized LOC120102349 Neighboring gene macrophage migration inhibitory factor-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables G protein-coupled receptor binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in chemotaxis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within circadian rhythm ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in endothelial cell proliferation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in endothelial cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuropeptide signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in positive regulation of smooth muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in spermatogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    prokineticin-2
    Names
    homolog of mouse Bv8 (Bombina variegata 8 kDa)
    homolog of mouse Bv8 (Bombina variegata 8 kDa); prokineticin 2
    prokineticin 2 beta

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037541.3NP_001032630.1  prokineticin-2 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001032630.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IBH4, F7EWJ2, Q6V8J7
      Related
      ENSRNOP00000015058.1, ENSRNOT00000015058.6
      Conserved Domains (1) summary
      pfam06607
      Location:23125
      Prokineticin
    2. NM_138852.3NP_620207.1  prokineticin-2 isoform 2 precursor

      See identical proteins and their annotated locations for NP_620207.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q8R413
      UniProtKB/TrEMBL
      A6IBH3
      Related
      ENSRNOP00000015075.1, ENSRNOT00000015075.4
      Conserved Domains (1) summary
      pfam06607
      Location:23104
      Prokineticin

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      133903210..133918126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039106990.2XP_038962918.1  prokineticin-2 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AGP5
      Related
      ENSRNOP00000092204.1, ENSRNOT00000111899.2
      Conserved Domains (1) summary
      pfam06607
      Location:23105
      Prokineticin
    2. XM_063285462.1XP_063141532.1  prokineticin-2 isoform X2