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    Borcs8 BLOC-1 related complex subunit 8 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688966, updated on 14-Nov-2024

    Summary

    Official Symbol
    Borcs8provided by RGD
    Official Full Name
    BLOC-1 related complex subunit 8provided by RGD
    Primary source
    RGD:1582941
    See related
    EnsemblRapid:ENSRNOG00000020427 AllianceGenome:RGD:1582941
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Mef2bnb
    Summary
    Predicted to be involved in heart development. Predicted to be located in lysosomal membrane. Predicted to be part of BORC complex. Orthologous to human BORCS8 (BLOC-1 related complex subunit 8). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 157.5), Thymus (RPKM 131.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Borcs8 in Genome Data Viewer
    Location:
    16p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (19308247..19314910, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (19274305..19280969, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (21022500..21029163, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 42 Neighboring gene transmembrane protein 161A Neighboring gene myocyte enhancer factor 2B Neighboring gene regulatory factor X-associated ankyrin-containing protein Neighboring gene nuclear receptor 2C2-associated protein Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of BORC complex  
    part_of BORC complex  
    located_in lysosomal membrane  

    General protein information

    Preferred Names
    BLOC-1-related complex subunit 8
    Names
    MEF2B neighbor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145726.1NP_001139198.1  BLOC-1-related complex subunit 8

      See identical proteins and their annotated locations for NP_001139198.1

      Status: VALIDATED

      Source sequence(s)
      CB782819, DV714338
      UniProtKB/TrEMBL
      A6KA83, D3Z8D3
      Related
      ENSRNOP00000062405.2, ENSRNOT00000064090.4
      Conserved Domains (1) summary
      pfam10167
      Location:8114
      BORCS8; BLOC-1-related complex sub-unit 8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      19308247..19314910 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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