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    Sult5a1 sulfotransferase family 5A, member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292077, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Sult5a1provided by RGD
    Official Full Name
    sulfotransferase family 5A, member 1provided by RGD
    Primary source
    RGD:1310002
    See related
    EnsemblRapid:ENSRNOG00000015695 AllianceGenome:RGD:1310002
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable sulfotransferase activity. Predicted to be involved in sulfation. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 59.6), Lung (RPKM 25.6) and 7 other tissues See more
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    Genomic context

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    See Sult5a1 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (68097808..68115426, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (51189287..51204275, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (55952861..55978583, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA MBII-202 Neighboring gene ribosomal protein L13 Neighboring gene copine 7 Neighboring gene uncharacterized LOC120098589 Neighboring gene dipeptidase 1 Neighboring gene charged multivesicular body protein 1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables sulfotransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in sulfation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    sulfotransferase family 5A, member 1
    NP_001188298.1
    XP_038953579.1
    XP_038953580.1
    XP_063134021.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201369.2 → NP_001188298.1  sulfotransferase family 5A, member 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      D4ADX9
      Related
      ENSRNOP00000045466.6, ENSRNOT00000051452.7
      Conserved Domains (1) summary
      pfam00685
      Location:50 → 297
      Sulfotransfer_1; Sulfotransferase domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      68097808..68115426 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277951.1 → XP_063134021.1  sulfotransferase family 5A, member 1 isoform X3

    2. XM_039097652.2 → XP_038953580.1  sulfotransferase family 5A, member 1 isoform X2

      Conserved Domains (1) summary
      pfam00685
      Location:98 → 242
      Sulfotransfer_1; Sulfotransferase domain

    3. XM_039097651.2 → XP_038953579.1  sulfotransferase family 5A, member 1 isoform X1

      UniProtKB/TrEMBL
      D4ADX9
      Conserved Domains (1) summary
      pfam00685
      Location:98 → 316
      Sulfotransfer_1; Sulfotransferase domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001106194.1: Suppressed sequence

      Description
      NM_001106194.1: This RefSeq has been removed because currently there is insufficient support for the transcript.
    Nucleotide Protein Strain
    Heading Accession and Version

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