U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    B4galnt4 beta-1,4-N-acetyl-galactosaminyl transferase 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309105, updated on 28-Oct-2024

    Summary

    Official Symbol
    B4galnt4provided by RGD
    Official Full Name
    beta-1,4-N-acetyl-galactosaminyl transferase 4provided by RGD
    Primary source
    RGD:1310052
    See related
    EnsemblRapid:ENSRNOG00000053075 AllianceGenome:RGD:1310052
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310052
    Summary
    Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be involved in chondroitin sulfate biosynthetic process. Predicted to be located in Golgi cisterna membrane. Orthologous to human B4GALNT4 (beta-1,4-N-acetyl-galactosaminyltransferase 4). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Biased expression in Brain (RPKM 68.9), Thymus (RPKM 11.3) and 3 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See B4galnt4 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205600989..205611889)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (196171394..196182294)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213870328..213881233)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097361 Neighboring gene small EDRK-rich factor 2 pseudogene Neighboring gene plakophilin 3 Neighboring gene single Ig and TIR domain containing Neighboring gene anoctamin 9 Neighboring gene RNA, U6 small nuclear 1205

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1
    Names
    beta 1,4-N-acetylgalactosaminyltransferase-transferase 4
    NP_001101032.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107562.1NP_001101032.1  N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1

      See identical proteins and their annotated locations for NP_001101032.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6HXN0, A6HXN1, D4A750
      Related
      ENSRNOP00000069694.1, ENSRNOT00000086483.3
      Conserved Domains (3) summary
      COG0463
      Location:8211021
      WcaA; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
      cl08459
      Location:143264
      PA14; PA14 domain
      cl11394
      Location:7141014
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      205600989..205611889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)