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    Rab36 RAB36, member RAS oncogene family [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690407, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Rab36provided by RGD
    Official Full Name
    RAB36, member RAS oncogene familyprovided by RGD
    Primary source
    RGD:1596098
    See related
    EnsemblRapid:ENSRNOG00000001311 AllianceGenome:RGD:1596098
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable GTP binding activity and GTPase activity. Orthologous to human RAB36 (RAB36, member RAS oncogene family). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 34.8), Lung (RPKM 13.9) and 4 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    20p12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (13606086..13624208, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (13606700..13624304, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (14557485..14573939, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene sperm antigen with calponin homology and coiled-coil domains 1-like Neighboring gene uncharacterized LOC120098869 Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene radial spoke head 14 homolog Neighboring gene G protein subunit alpha z Neighboring gene ribosomal protein L9, pseudogene 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables GTPase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    ras-related protein Rab-36
    NP_001103059.1
    NP_001402628.1
    XP_063135598.1
    XP_063135599.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109589.3 → NP_001103059.1  ras-related protein Rab-36

      See identical proteins and their annotated locations for NP_001103059.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      B2RZ53, F7F2S0
      Conserved Domains (1) summary
      cl38936
      Location:58 → 223
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. NM_001415699.1 → NP_001402628.1  ras-related protein Rab-36

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      B2RZ53, F7F2S0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      13606086..13624208 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279528.1 → XP_063135598.1  ras-related protein Rab-36 isoform X1

      UniProtKB/TrEMBL
      A0A8I5YC69

    2. XM_063279529.1 → XP_063135599.1  ras-related protein Rab-36 isoform X2

      UniProtKB/TrEMBL
      B2RZ53, F7F2S0
      Related
      ENSRNOP00000078135.2, ENSRNOT00000095296.2

    RNA

    1. XR_010060757.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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