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    Actr3b actin related protein 3B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362298, updated on 2-Nov-2024

    Summary

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    Symbol
    Actr3bprovided by RGD
    Full Name
    actin related protein 3Bprovided by RGD
    Primary source
    RGD:1565759
    See related
    EnsemblRapid:ENSRNOG00000031855 AllianceGenome:RGD:1565759
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565759
    Summary
    Predicted to contribute to actin filament binding activity. Orthologous to several human genes including ACTR3B (actin related protein 3B). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 221.9), Heart (RPKM 111.8) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Actr3b in Genome Data Viewer
    Location:
    4q11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (9995553..10089422, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (9261631..9355496, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (5644287..5672708)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120102206 Neighboring gene uncharacterized LOC102548175 Neighboring gene uncharacterized LOC134486709 Neighboring gene uncharacterized LOC134486710 Neighboring gene uncharacterized LOC120102207 Neighboring gene X-ray repair cross complementing 2 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Analysis of oxygen/glucose-deprivation-induced changes in SUMO3 conjugation using SILAC-based quantitative proteomics. Yang W, et al. J Proteome Res, 2012 Feb 3. PMID 22082260, Free PMC Article
    2. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    contributes_to actin filament binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    actin-related protein 3B
    Names
    ARP3 actin related protein 3 homolog B
    actin-related protein 3B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191860.1 → NP_001178789.1  actin-related protein 3B

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6A7C9, A0A8I6GL35
      Related
      ENSRNOP00000095302.1, ENSRNOT00000108546.2
      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 417
      PTZ00280; Actin-related protein 3; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      9995553..10089422 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039107746.2 → XP_038963674.1  actin-related protein 3B isoform X2

      UniProtKB/TrEMBL
      A0A8I6A7C9
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 329
      PTZ00280; Actin-related protein 3; Provisional

    2. XM_039107745.1 → XP_038963673.1  actin-related protein 3B isoform X4

      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 280
      PTZ00280; Actin-related protein 3; Provisional

    3. XM_039107743.2 → XP_038963671.1  actin-related protein 3B isoform X3

      UniProtKB/TrEMBL
      A6KJJ7
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 288
      PTZ00280; Actin-related protein 3; Provisional

    4. XM_039107744.2 → XP_038963672.1  actin-related protein 3B isoform X3

      UniProtKB/TrEMBL
      A6KJJ7
      Conserved Domains (1) summary
      PTZ00280
      Location:1 → 288
      PTZ00280; Actin-related protein 3; Provisional

    5. XM_063286225.1 → XP_063142295.1  actin-related protein 3B isoform X2

    6. XM_063286224.1 → XP_063142294.1  actin-related protein 3B isoform X1

      Related
      ENSRNOP00000110978.1, ENSRNOT00000160106.1

    7. XM_039107747.2 → XP_038963675.1  actin-related protein 3B isoform X5

      Conserved Domains (1) summary
      PTZ00280
      Location:2 → 197
      PTZ00280; Actin-related protein 3; Provisional
    Nucleotide Protein Strain
    Heading Accession and Version

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