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    Fhip2b FHF complex subunit HOOK interacting protein 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306015, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Fhip2bprovided by RGD
    Official Full Name
    FHF complex subunit HOOK interacting protein 2Bprovided by RGD
    Primary source
    RGD:1308870
    See related
    EnsemblRapid:ENSRNOG00000012014 AllianceGenome:RGD:1308870
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rai16; Fam160b2
    Summary
    Orthologous to human FHIP2B (FHF complex subunit HOOK interacting protein 2B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Muscle (RPKM 138.9), Heart (RPKM 96.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Fhip2b in Genome Data Viewer
    Location:
    15p11
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (52066341..52084296, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (45656641..45674603, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (52271495..52288938, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene HR upstream open reading frame Neighboring gene HR, lysine demethylase and nuclear receptor corepressor Neighboring gene nudix hydrolase 18 Neighboring gene dematin actin binding protein Neighboring gene fibroblast growth factor 17 Neighboring gene nucleophosmin/nucleoplasmin 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC188555

    General protein information

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    Preferred Names
    FHF complex subunit HOOK-interacting protein 2B
    Names
    family with sequence similarity 160, member B2
    retinoic acid induced 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001170474.2 → NP_001163945.1  FHF complex subunit HOOK-interacting protein 2B

      See identical proteins and their annotated locations for NP_001163945.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000015
      UniProtKB/TrEMBL
      B5DEJ2, F7FI79
      Related
      ENSRNOP00000016209.7, ENSRNOT00000016209.7
      Conserved Domains (1) summary
      pfam10257
      Location:79 → 477
      RAI16-like; Retinoic acid induced 16-like protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      52066341..52084296 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017599704.3 → XP_017455193.1  FHF complex subunit HOOK-interacting protein 2B isoform X1

      UniProtKB/TrEMBL
      F7FI79
      Related
      ENSRNOP00000082834.2, ENSRNOT00000107402.2

    2. XM_039093355.2 → XP_038949283.1  FHF complex subunit HOOK-interacting protein 2B isoform X3

      UniProtKB/TrEMBL
      A0A8I6AHJ2
      Conserved Domains (1) summary
      pfam10257
      Location:10 → 387
      RAI16-like; Retinoic acid induced 16-like protein

    3. XM_039093353.2 → XP_038949281.1  FHF complex subunit HOOK-interacting protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A8I6AHJ2
      Conserved Domains (1) summary
      pfam10257
      Location:21 → 419
      RAI16-like; Retinoic acid induced 16-like protein

    4. XM_039093354.2 → XP_038949282.1  FHF complex subunit HOOK-interacting protein 2B isoform X2

      UniProtKB/TrEMBL
      A0A8I6AHJ2
      Conserved Domains (1) summary
      pfam10257
      Location:21 → 419
      RAI16-like; Retinoic acid induced 16-like protein

    5. XM_039093356.2 → XP_038949284.1  FHF complex subunit HOOK-interacting protein 2B isoform X4

      Conserved Domains (1) summary
      pfam10257
      Location:79 → 477
      RAI16-like; Retinoic acid induced 16-like protein

    RNA

    1. XR_005493730.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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