U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Catsper2 cation channel, sperm associated 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 366174, updated on 14-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Catsper2provided by RGD
    Official Full Name
    cation channel, sperm associated 2provided by RGD
    Primary source
    RGD:1307620
    See related
    EnsemblRapid:ENSRNOG00000023064 AllianceGenome:RGD:1307620
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable voltage-gated calcium channel activity. Predicted to be involved in several processes, including calcium ion transport; flagellated sperm motility; and sperm capacitation. Predicted to be located in sperm flagellum. Predicted to be part of CatSper complex. Orthologous to human CATSPER2 (cation channel sperm associated 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Testes (RPKM 133.8), Kidney (RPKM 16.5) and 8 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Catsper2 in Genome Data Viewer
    Location:
    3q35
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (128822387..128842501, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (108368654..108389380, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (113357361..113379498, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene diphosphoinositol pentakisphosphate kinase 1 Neighboring gene creatine kinase, mitochondrial 1 Neighboring gene stereocilin Neighboring gene protein disulfide isomerase family A, member 3 Neighboring gene U6 spliceosomal RNA Neighboring gene RNA, U105C small nucleolar

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The effect of clomiphene citrate and human chorionic gonadotropin on the expression of CatSper1, CatSper2, LHCGR, and SF1 genes, as well as the structural changes in testicular tissue of adult rats.
      Title: The effect of clomiphene citrate and human chorionic gonadotropin on the expression of CatSper1, CatSper2, LHCGR, and SF1 genes, as well as the structural changes in testicular tissue of adult rats.
    2. It is feasible to achieve male contraception by silencing the expression of CatSper2, the key protein involved in sperm hyperactivation.
      Title: Regulation of fertilization in male rats by CatSper2 knockdown.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables calcium-activated cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables voltage-gated calcium channel activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables voltage-gated calcium channel activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in calcium ion transport ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in fertilization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within fertilization ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in flagellated sperm motility IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in flagellated sperm motility IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within flagellated sperm motility ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in monoatomic cation transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sperm capacitation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within sperm capacitation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    part_of CatSper complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of CatSper complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of CatSper complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of CatSper complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in sperm flagellum ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cation channel sperm-associated protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012220.1 → NP_001012220.1  cation channel sperm-associated protein 2

      See identical proteins and their annotated locations for NP_001012220.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079422
      UniProtKB/Swiss-Prot
      Q6AXP6
      UniProtKB/TrEMBL
      A0A8I5ZML1, A6HPN9
      Related
      ENSRNOP00000038712.3, ENSRNOT00000030019.5
      Conserved Domains (2) summary
      pfam00183
      Location:419 → 463
      HSP90; Hsp90 protein
      pfam00520
      Location:138 → 348
      Ion_trans; Ion transport protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      128822387..128842501 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017591949.3 → XP_017447438.1  cation channel sperm-associated protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q6AXP6
      UniProtKB/TrEMBL
      A0A8I5ZML1, A6HPN9
      Conserved Domains (2) summary
      pfam00183
      Location:419 → 463
      HSP90; Hsp90 protein
      pfam00520
      Location:138 → 348
      Ion_trans; Ion transport protein

    2. XM_063284284.1 → XP_063140354.1  cation channel sperm-associated protein 2 isoform X2

      Related
      ENSRNOP00000098911.1, ENSRNOT00000136426.1

    3. XM_008762187.4 → XP_008760409.1  cation channel sperm-associated protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008760409.1

      UniProtKB/Swiss-Prot
      Q6AXP6
      UniProtKB/TrEMBL
      A0A8I5ZML1, A6HPN9
      Conserved Domains (2) summary
      pfam00183
      Location:419 → 463
      HSP90; Hsp90 protein
      pfam00520
      Location:138 → 348
      Ion_trans; Ion transport protein

    4. XM_006234860.4 → XP_006234922.1  cation channel sperm-associated protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8I5ZML1
      Conserved Domains (2) summary
      pfam00183
      Location:379 → 423
      HSP90; Hsp90 protein
      pfam00520
      Location:146 → 308
      Ion_trans; Ion transport protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AXP6.1 GenPept UniProtKB/Swiss-Prot:Q6AXP6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous