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    C2h4orf33 similar to human chromosome 4 open reading frame 33 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361941, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C2h4orf33provided by RGD
    Official Full Name
    similar to human chromosome 4 open reading frame 33provided by RGD
    Primary source
    RGD:1359508
    See related
    EnsemblRapid:ENSRNOG00000038330 AllianceGenome:RGD:1359508
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359508
    Summary
    Orthologous to human C4orf33 (chromosome 4 open reading frame 33). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Kidney (RPKM 32.2), Thymus (RPKM 26.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C2h4orf33 in Genome Data Viewer
    Location:
    2q26
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (126692176..126769183)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (124764263..124830001)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (128675786..128738215)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene ribosome biogenesis protein NSA2 homolog Neighboring gene jade family PHD finger 1 Neighboring gene sodium channel and clathrin linker 1 Neighboring gene 40S ribosomal protein S21-like Neighboring gene uncharacterized LOC120100811

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC109006

    General protein information

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    Preferred Names
    UPF0462 protein C4orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001009707.1 → NP_001009707.1  UPF0462 protein C4orf33 homolog

      See identical proteins and their annotated locations for NP_001009707.1

      Status: PROVISIONAL

      Source sequence(s)
      BC088236
      UniProtKB/Swiss-Prot
      Q5M845
      UniProtKB/TrEMBL
      A6II61
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      126692176..126769183
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102595.2 → XP_038958523.1  UPF0462 protein C4orf33 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5M845
      UniProtKB/TrEMBL
      A6II61
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    2. XM_006232308.5 → XP_006232370.1  UPF0462 protein C4orf33 homolog isoform X1

      See identical proteins and their annotated locations for XP_006232370.1

      UniProtKB/Swiss-Prot
      Q5M845
      UniProtKB/TrEMBL
      A6II61
      Related
      ENSRNOP00000085480.2, ENSRNOT00000114451.2
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    3. XM_039102596.2 → XP_038958524.1  UPF0462 protein C4orf33 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I6A1R0, A6II63
      Related
      ENSRNOP00000055168.3, ENSRNOT00000058366.4

    4. XM_006232306.5 → XP_006232368.1  UPF0462 protein C4orf33 homolog isoform X1

      See identical proteins and their annotated locations for XP_006232368.1

      UniProtKB/Swiss-Prot
      Q5M845
      UniProtKB/TrEMBL
      A6II61
      Conserved Domains (1) summary
      cl14783
      Location:49 → 171
      DOMON_like; Domon-like ligand-binding domains

    RNA

    1. XR_351653.5 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5M845.1 GenPept UniProtKB/Swiss-Prot:Q5M845

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