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    PELP1-DT PELP1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101559451, updated on 17-Sep-2024

    Summary

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    Official Symbol
    PELP1-DTprovided by HGNC
    Official Full Name
    PELP1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55614
    See related
    Ensembl:ENSG00000244184 AllianceGenome:HGNC:55614
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 6.1), prostate (RPKM 2.7) and 12 other tissues See more
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    Genomic context

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    See PELP1-DT in Genome Data Viewer
    Location:
    17p13.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (4704230..4705529)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (4593962..4595259)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (4607525..4608824)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371499 Neighboring gene Sharpr-MPRA regulatory region 3058 Neighboring gene ReSE screen-validated silencer GRCh37_chr17:4552879-4553094 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47177/47178 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47179 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47181 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47184 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47187 Neighboring gene proline, glutamate and leucine rich protein 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47196 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47199 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47200 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47201 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47204 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47205 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47206 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47207 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47209 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11544 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47211 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47214 Neighboring gene ribosomal protein S12 pseudogene 29 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8042 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11545 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_47220 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:4621547-4622746 Neighboring gene arrestin beta 2 Neighboring gene MPRA-validated peak2699 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:4634559-4635378 Neighboring gene mediator complex subunit 11 Neighboring gene C-X-C motif chemokine ligand 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103482.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC091153, BX109211
      Related
      ENST00000497885.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      4704230..4705529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      4593962..4595259
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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