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    NALT1 NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1 [ Homo sapiens (human) ]

    Gene ID: 101928483, updated on 22-Oct-2024

    Summary

    Official Symbol
    NALT1provided by HGNC
    Official Full Name
    NOTCH1 associated lncRNA in T cell acute lymphoblastic leukemia 1provided by HGNC
    Primary source
    HGNC:HGNC:51192
    See related
    Ensembl:ENSG00000237886 AllianceGenome:HGNC:51192
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    NALT; LINC01573; MIR4674HG; TCONS_l2_00029132
    Expression
    Ubiquitous expression in prostate (RPKM 2.0), small intestine (RPKM 1.8) and 24 other tissues See more
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    Genomic context

    See NALT1 in Genome Data Viewer
    Location:
    9q34.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (136547842..136549744)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (148779701..148781603)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (139442294..139444196)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene notch receptor 1 Neighboring gene uncharacterized LOC124902310 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139420763-139421634 Neighboring gene microRNA 4673 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29311 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20525 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139433302-139433969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139434130-139434814 Neighboring gene Sharpr-MPRA regulatory region 6589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139436183-139436865 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29314 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20526 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20527 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20528 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20529 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139441357-139442268 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:139444236-139445435 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20530 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29316 Neighboring gene microRNA 4674 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139458066-139458926 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139458927-139459788 Neighboring gene VISTA enhancer hs2207 Neighboring gene uncharacterized LOC124902311 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29317 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139473242-139473768 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139479375-139480026 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139493297-139493830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139494899-139495430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139495673-139496524 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:139499139-139499319 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:139499925-139500774 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:139501625-139502474 Neighboring gene Sharpr-MPRA regulatory region 9516 Neighboring gene long intergenic non-protein coding RNA 1451

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    General gene information

    Other Names

    • MIR4674 host gene (non-protein coding)
    • MIR4674HG, LINC01573
    • NOTCH1 associated long non-coding RNA in pediatric T-ALL
    • long intergenic non-protein coding RNA 1573

    Clone Names

    • FLJ35432

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_121577.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL354671
      Related
      ENST00000743484.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      136547842..136549744
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      148779701..148781603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)