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    ALOX12-AS1 ALOX12 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100506713, updated on 22-Oct-2024

    Summary

    Official Symbol
    ALOX12-AS1provided by HGNC
    Official Full Name
    ALOX12 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:51342
    See related
    Ensembl:ENSG00000267532 AllianceGenome:HGNC:51342
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in esophagus (RPKM 3.6), brain (RPKM 2.4) and 24 other tissues See more
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    Genomic context

    See ALOX12-AS1 in Genome Data Viewer
    Location:
    17p13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (6985123..7012334, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (6885814..6912959, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (6888442..6915653, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene Spi-C transcription factor pseudogene 3 Neighboring gene uncharacterized LOC124903906 Neighboring gene arachidonate 12-lipoxygenase, 12S type Neighboring gene RNASEK-C17orf49 readthrough Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:6915304-6915924 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11592 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11593 Neighboring gene H3K27ac hESC enhancer GRCh37_chr17:6917563-6918063 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:6918414-6918914 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:6919327-6920526 Neighboring gene ribonuclease K Neighboring gene mir-497-195 cluster host gene Neighboring gene BPTF associated chromatin complex component 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    An atlas of genetic influences on human blood metabolites.
    EBI GWAS Catalog

    General gene information

    Markers

    Clone Names

    • AC027763.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040089.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK074580, BI559919
      Related
      ENST00000399541.7

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      6985123..7012334 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      6885814..6912959 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)