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    LINC01023 long intergenic non-protein coding RNA 1023 [ Homo sapiens (human) ]

    Gene ID: 100652853, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01023provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1023provided by HGNC
    Primary source
    HGNC:HGNC:49004
    See related
    AllianceGenome:HGNC:49004
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HP07349
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    Genomic context

    See LINC01023 in Genome Data Viewer
    Location:
    5q21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (108727825..108728261, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (109230442..109230878, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108063526..108063962, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr5:107953591-107954236 Neighboring gene ribosomal protein S20 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 1653 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr5:108007873-108008872 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:108017096-108017596 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108020945-108021578 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108021579-108022211 Neighboring gene MPRA-validated peak5405 silencer Neighboring gene uncharacterized LOC107986440 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:108063205-108063786 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16221 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16223 Neighboring gene FER tyrosine kinase Neighboring gene RACK1 pseudogene 1 Neighboring gene MPRA-validated peak5407 silencer Neighboring gene LSM2 pseudogene 2

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046368.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BF972671

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      108727825..108728261 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      109230442..109230878 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)