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    NEK2-DT NEK2 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 91548, updated on 22-Oct-2024

    Summary

    Official Symbol
    NEK2-DTprovided by HGNC
    Official Full Name
    NEK2 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:28085
    See related
    Ensembl:ENSG00000231057 AllianceGenome:HGNC:28085
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See NEK2-DT in Genome Data Viewer
    Location:
    1q32.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (211675762..211687459)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (210921890..210933582)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (211849104..211860801)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:211815933-211816768 Neighboring gene Sharpr-MPRA regulatory region 10021 Neighboring gene non-coding transcript regulating alternative splicing Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2489 Neighboring gene Sharpr-MPRA regulatory region 55 Neighboring gene farnesyl diphosphate synthase pseudogene 8 Neighboring gene NIMA related kinase 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:211868601-211869100 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1791 Neighboring gene NANOG hESC enhancer GRCh37_chr1:211877490-211877991 Neighboring gene uncharacterized LOC105372904 Neighboring gene Sharpr-MPRA regulatory region 10839 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:211908669-211909168 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_3231 Neighboring gene lysophosphatidylglycerol acyltransferase 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_3241 Neighboring gene RNA, 7SL, cytoplasmic 344, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_148994.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC096637, BU507471
      Related
      ENST00000703066.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      211675762..211687459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      210921890..210933582
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)