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    SUGT1P1 SUGT1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 441394, updated on 22-Oct-2024

    Summary

    Official Symbol
    SUGT1P1provided by HGNC
    Official Full Name
    SUGT1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:19384
    See related
    Ensembl:ENSG00000228072 AllianceGenome:HGNC:19384
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SGT1P; SUGT1P; bA255A11.1
    Expression
    Biased expression in testis (RPKM 6.1), brain (RPKM 1.2) and 12 other tissues See more
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    Genomic context

    See SUGT1P1 in Genome Data Viewer
    Location:
    9p13.3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (33500756..33511166, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (33519262..33529671, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (33500754..33511164, complement)

    Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28297 Neighboring gene nucleolar protein 6 Neighboring gene uncharacterized LOC107987061 Neighboring gene microRNA 6851 Neighboring gene vomeronasal 1 receptor 47 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28298 Neighboring gene ankyrin repeat domain 18B Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28299 Neighboring gene MPRA-validated peak7218 silencer Neighboring gene melanoma antigen pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • SGT1 homolog, MIS12 kinetochore complex assembly cochaperone pseudogene 1
    • bA255A11.10 (putative novel T cell receptor beta chain V region protein)
    • suppressor of G2 allele of SKP1 pseudogene 1

    Clone Names

    • MGC15151

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003667.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139008, BE264023, DA804368, DB133316
      Related
      ENST00000724479.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

      Range
      33500756..33511166 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060933.1 Alternate T2T-CHM13v2.0

      Range
      33519262..33529671 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001007550.1: Suppressed sequence

      Description
      NM_001007550.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.