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    PAN3-AS1 PAN3 antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 100288730, updated on 17-Sep-2024

    Summary

    Official Symbol
    PAN3-AS1provided by HGNC
    Official Full Name
    PAN3 antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:39932
    See related
    AllianceGenome:HGNC:39932
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in testis (RPKM 2.3), spleen (RPKM 1.4) and 25 other tissues See more
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    Genomic context

    See PAN3-AS1 in Genome Data Viewer
    Location:
    13q12.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (28136843..28139174, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (27359395..27361727, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (28710980..28713311, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene fms related receptor tyrosine kinase 3 Neighboring gene katanin regulatory subunit B1 like 1 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5206 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5207 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7510 Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 8 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5208 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5209 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5210 Neighboring gene Sharpr-MPRA regulatory region 11800 Neighboring gene Sharpr-MPRA regulatory region 9463 Neighboring gene poly(A) specific ribonuclease subunit PAN3 Neighboring gene eukaryotic translation elongation factor 1 alpha 1 pseudogene 3 Neighboring gene RNA, U6 small nuclear 82, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
    EBI GWAS Catalog

    General gene information

    Markers

    Other Names

    • PAN3 antisense RNA 1 (non-protein coding)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029383.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK307165, BC045730, DC343344

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      28136843..28139174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      27359395..27361727 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)