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    LINC02324 long intergenic non-protein coding RNA 2324 [ Homo sapiens (human) ]

    Gene ID: 100128233, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02324provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2324provided by HGNC
    Primary source
    HGNC:HGNC:53244
    See related
    Ensembl:ENSG00000255002 AllianceGenome:HGNC:53244
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02324 in Genome Data Viewer
    Location:
    14q23.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (65212893..65222347, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (59417752..59427206, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (65679611..65689065, complement)

    Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene RNA, U2 small nuclear 14, pseudogene Neighboring gene uncharacterized LOC124903329 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8542 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8543 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8544 Neighboring gene Sharpr-MPRA regulatory region 433 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8545 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8546 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr14:65653928-65654630 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:65654631-65655332 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8547 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8548 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8549 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr14:65679956-65680506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8550 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancers GRCh37_chr14:65691562-65692442 and GRCh37_chr14:65692443-65693322 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5848 Neighboring gene IGF like family receptor 1 pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:65704769-65705337 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:65722191-65722692 Neighboring gene ribosomal protein L21 pseudogene 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • CTD-2509G16.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103769.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX161428
      Related
      ENST00000531609.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

      Range
      65212893..65222347 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060938.1 Alternate T2T-CHM13v2.0

      Range
      59417752..59427206 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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