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    LINC01494 long intergenic non-protein coding RNA 1494 [ Homo sapiens (human) ]

    Gene ID: 101928537, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC01494provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1494provided by HGNC
    Primary source
    HGNC:HGNC:51152
    See related
    Ensembl:ENSG00000235024 AllianceGenome:HGNC:51152
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC01494 in Genome Data Viewer
    Location:
    2q35
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (218900814..218930637, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (219389182..219419006, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (219765536..219795359, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Wnt family member 6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12328 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12329 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12330 Neighboring gene Wnt family member 10A Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12332 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12333 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12334 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17131 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:219757282-219757864 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17134 Neighboring gene uncharacterized LOC105373882 Neighboring gene Sharpr-MPRA regulatory region 8081 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17135 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12336 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12337 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17136 Neighboring gene uncharacterized LOC124906119 Neighboring gene RNA, U6 small nuclear 642, pseudogene Neighboring gene uncharacterized LOC124907984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12338 Neighboring gene keratin 8 pseudogene 30 Neighboring gene cyclin dependent kinase 5 regulatory subunit 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Clone Names

    • AC073128.10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110238.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC038542, BI488698
      Related
      ENST00000419511.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      218900814..218930637 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      219389182..219419006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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    Research Materials