NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001078645.3 → NP_001072113.1 cell division cycle protein 16 homolog isoform 1
See identical proteins and their annotated locations for NP_001072113.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) represents the longest transcript. Variants 1 and 2 encode the same isoform (1) .
- Source sequence(s)
-
AW662777, AW953481, BM663581, BQ051608, BQ424567, DC391369
- Consensus CDS
-
CCDS9542.2
- UniProtKB/Swiss-Prot
- A2A365, Q13042, Q5T8C8, Q7Z651, Q96AE6, Q9Y564
- UniProtKB/TrEMBL
-
B2RCW0
- Related
- ENSP00000348554.3, ENST00000356221.8
- Conserved Domains (5) summary
-
- COG3063
Location:371 → 511
- PilF; Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]
- TIGR02917
Location:10 → 502
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:402 → 430
- TPR; TPR repeat [structural motif]
- pfam13424
Location:447 → 511
- TPR_12; Tetratricopeptide repeat
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
-
NM_001318517.3 → NP_001305446.1 cell division cycle protein 16 homolog isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice acceptor site in the 5' coding region and lacks an exon segment in the 3' UTR, compared to variant 2. Variants 3 and 5 encode the same isoform (2), which is one amino acid shorter than isoform 1.
- Source sequence(s)
-
AK315302, BM663581, DC391369, U18291
- Consensus CDS
-
CCDS81786.1
- UniProtKB/TrEMBL
-
B2RCW0
- Related
- ENSP00000252457.5, ENST00000252457.9
- Conserved Domains (5) summary
-
- sd00006
Location:401 → 429
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 93
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13424
Location:446 → 510
- TPR_12; Tetratricopeptide repeat
- cl26002
Location:370 → 510
- TPR_11; TPR repeat
- cl26860
Location:336 → 401
- PRK15359; type III secretion system chaperone protein SscB; Provisional
-
NM_001318518.3 → NP_001305447.1 cell division cycle protein 16 homolog isoform 3
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses an alternate splice acceptor site in the 5' coding region and lacks an in-frame exon in the 3' coding region, compared to variant 2. These differences result in a shorter isoform (3), compared to isoform 1.
- Source sequence(s)
-
AF164598, AK315302, BC050575, BM663581, DC391369
- UniProtKB/TrEMBL
-
B2RCW0
- Related
- ENSP00000252458.6, ENST00000252458.6
- Conserved Domains (4) summary
-
- TIGR02917
Location:133 → 454
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:395 → 421
- TPR; TPR repeat [structural motif]
- pfam13424
Location:395 → 459
- TPR_12; Tetratricopeptide repeat
- pfam12895
Location:15 → 93
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
-
NM_001330101.2 → NP_001317030.1 cell division cycle protein 16 homolog isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) uses an alternate in-frame splice acceptor site in the 5' coding region, compared to variant 2. Variants 3 and 5 encode the same isoform (2), which is one amino acid shorter than isoform 1.
- Source sequence(s)
-
AK315302, BC050575, BM663581, DC391369, U18291
- Consensus CDS
-
CCDS81786.1
- UniProtKB/TrEMBL
-
B2RCW0
- Conserved Domains (5) summary
-
- sd00006
Location:401 → 429
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 93
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13424
Location:446 → 510
- TPR_12; Tetratricopeptide repeat
- cl26002
Location:370 → 510
- TPR_11; TPR repeat
- cl26860
Location:336 → 401
- PRK15359; type III secretion system chaperone protein SscB; Provisional
-
NM_001330104.2 → NP_001317033.1 cell division cycle protein 16 homolog isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks a 5' exon compared to variant 1. This variant represents translation initiation at a downstream start codon compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream start codon to encode an isoform (4) that has a shorter N-terminus, compared to isoform 1. Variants 6 and 7 encode the same isoform (4).
- Source sequence(s)
-
BC050575, BM663581, BQ668939, BQ944893, CN401097, DC391369
- Consensus CDS
-
CCDS81787.1
- UniProtKB/TrEMBL
-
Q5T8C6
- Conserved Domains (4) summary
-
- COG3063
Location:277 → 417
- PilF; Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]
- TIGR02917
Location:40 → 408
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:308 → 336
- TPR; TPR repeat [structural motif]
- pfam13424
Location:353 → 417
- TPR_12; Tetratricopeptide repeat
-
NM_001330105.2 → NP_001317034.1 cell division cycle protein 16 homolog isoform 4
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks a 5' exon and lacks an exon segment in the 3' UTR compared to variant 1. This variant represents translation initiation at a downstream start codon compared to variant 1; the 5'-most initiation codon, as used in variant 1, is associated with a truncated ORF that would render the transcript a candidate for nonsense-mediated decay (NMD). Leaky scanning may allow translation initiation at the downstream start codon to encode an isoform (4) that has a shorter N-terminus, compared to isoform 1. Variants 6 and 7 encode the same isoform (4).
- Source sequence(s)
-
BQ009960, BQ668939, BQ944893, CN401097, DC391369
- Consensus CDS
-
CCDS81787.1
- UniProtKB/TrEMBL
-
Q5T8C6
- Related
- ENSP00000364457.1, ENST00000375308.5
- Conserved Domains (4) summary
-
- COG3063
Location:277 → 417
- PilF; Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]
- TIGR02917
Location:40 → 408
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:308 → 336
- TPR; TPR repeat [structural motif]
- pfam13424
Location:353 → 417
- TPR_12; Tetratricopeptide repeat
-
NM_003903.5 → NP_003894.3 cell division cycle protein 16 homolog isoform 1
See identical proteins and their annotated locations for NP_003894.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) lacks an exon segment in the 3' UTR, compared to variant 2. Variants 1 and 2 encode the same isoform (1).
- Source sequence(s)
-
BQ051608, BQ424567, BU687000, DC391369
- Consensus CDS
-
CCDS9542.2
- UniProtKB/Swiss-Prot
- A2A365, Q13042, Q5T8C8, Q7Z651, Q96AE6, Q9Y564
- UniProtKB/TrEMBL
-
B2RCW0
- Related
- ENSP00000353549.3, ENST00000360383.7
- Conserved Domains (5) summary
-
- COG3063
Location:371 → 511
- PilF; Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]
- TIGR02917
Location:10 → 502
- PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
- sd00006
Location:402 → 430
- TPR; TPR repeat [structural motif]
- pfam13424
Location:447 → 511
- TPR_12; Tetratricopeptide repeat
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000013.11 Reference GRCh38.p14 Primary Assembly
- Range
-
114234897..114272723
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011534853.3 → XP_011533155.1 cell division cycle protein 16 homolog isoform X2
- UniProtKB/TrEMBL
- A0A3B3ISD2, B2RCW0
- Related
- ENSP00000497168.1, ENST00000650489.1
- Conserved Domains (4) summary
-
- smart00028
Location:448 → 478
- TPR; Tetratricopeptide repeats
- sd00006
Location:447 → 473
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13414
Location:447 → 509
- TPR_11; TPR repeat
-
XM_005266206.3 → XP_005266263.1 cell division cycle protein 16 homolog isoform X6
- UniProtKB/TrEMBL
-
B2RCW0
- Conserved Domains (5) summary
-
- smart00028
Location:448 → 478
- TPR; Tetratricopeptide repeats
- sd00006
Location:402 → 430
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13414
Location:401 → 476
- TPR_11; TPR repeat
- pfam13424
Location:447 → 509
- TPR_12; Tetratricopeptide repeat
-
XM_011534851.3 → XP_011533153.1 cell division cycle protein 16 homolog isoform X1
See identical proteins and their annotated locations for XP_011533153.1
- UniProtKB/TrEMBL
-
B2RCW0
- Conserved Domains (5) summary
-
- smart00028
Location:397 → 427
- TPR; Tetratricopeptide repeats
- sd00006
Location:396 → 422
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13414
Location:396 → 458
- TPR_11; TPR repeat
- pfam13424
Location:350 → 421
- TPR_12; Tetratricopeptide repeat
-
XM_047430755.1 → XP_047286711.1 cell division cycle protein 16 homolog isoform X7
-
XM_047430756.1 → XP_047286712.1 cell division cycle protein 16 homolog isoform X8
-
XM_047430754.1 → XP_047286710.1 cell division cycle protein 16 homolog isoform X5
-
XM_017020831.3 → XP_016876320.1 cell division cycle protein 16 homolog isoform X3
- UniProtKB/TrEMBL
-
B2RCW0
- Conserved Domains (4) summary
-
- smart00028
Location:448 → 478
- TPR; Tetratricopeptide repeats
- sd00006
Location:447 → 473
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13414
Location:447 → 509
- TPR_11; TPR repeat
-
XM_017020830.3 → XP_016876319.1 cell division cycle protein 16 homolog isoform X1
- UniProtKB/TrEMBL
-
B2RCW0
- Related
- ENSP00000486027.1, ENST00000628084.2
- Conserved Domains (5) summary
-
- smart00028
Location:397 → 427
- TPR; Tetratricopeptide repeats
- sd00006
Location:396 → 422
- TPR; TPR repeat [structural motif]
- pfam12895
Location:15 → 94
- ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
- pfam13414
Location:396 → 458
- TPR_11; TPR repeat
- pfam13424
Location:350 → 421
- TPR_12; Tetratricopeptide repeat
-
XM_047430753.1 → XP_047286709.1 cell division cycle protein 16 homolog isoform X4
-
XM_047430757.1 → XP_047286713.1 cell division cycle protein 16 homolog isoform X9
-
XM_047430758.1 → XP_047286714.1 cell division cycle protein 16 homolog isoform X10
RNA
-
XR_001749714.3 RNA Sequence
-
XR_245358.3 RNA Sequence
Alternate T2T-CHM13v2.0
Genomic
-
NC_060937.1 Alternate T2T-CHM13v2.0
- Range
-
113443956..113481783
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054375145.1 → XP_054231120.1 cell division cycle protein 16 homolog isoform X2
- UniProtKB/TrEMBL
-
A0A3B3ISD2
-
XM_054375149.1 → XP_054231124.1 cell division cycle protein 16 homolog isoform X6
-
XM_054375143.1 → XP_054231118.1 cell division cycle protein 16 homolog isoform X1
-
XM_054375150.1 → XP_054231125.1 cell division cycle protein 16 homolog isoform X7
-
XM_054375151.1 → XP_054231126.1 cell division cycle protein 16 homolog isoform X8
-
XM_054375148.1 → XP_054231123.1 cell division cycle protein 16 homolog isoform X5
-
XM_054375146.1 → XP_054231121.1 cell division cycle protein 16 homolog isoform X3
-
XM_054375144.1 → XP_054231119.1 cell division cycle protein 16 homolog isoform X1
-
XM_054375147.1 → XP_054231122.1 cell division cycle protein 16 homolog isoform X4
-
XM_054375152.1 → XP_054231127.1 cell division cycle protein 16 homolog isoform X9
-
XM_054375153.1 → XP_054231128.1 cell division cycle protein 16 homolog isoform X10
RNA
-
XR_008488793.1 RNA Sequence
-
XR_008488794.1 RNA Sequence