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    CHP1P2 CHP1 pseudogene 2 [ Homo sapiens (human) ]

    Gene ID: 729603, updated on 17-Sep-2024

    Summary

    Official Symbol
    CHP1P2provided by HGNC
    Official Full Name
    CHP1 pseudogene 2provided by HGNC
    Primary source
    HGNC:HGNC:54896
    See related
    AllianceGenome:HGNC:54896
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Summary
    This locus on chromosome 6q25.3 represents a single-exon transcribed pseudogene of the multi-exon calcium binding protein P22 gene which resides on chromosome 15q13.3. This pseudogene is situated within an intron region of the insulin-like growth factor 2 receptor gene (IGF2R). [provided by RefSeq, Jan 2009]
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    Genomic context

    See CHP1P2 in Genome Data Viewer
    Location:
    6q25.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (160093082..160096212)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (161339239..161342371)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (160514114..160517244)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene insulin like growth factor 2 receptor Neighboring gene antisense of IGF2R non-protein coding RNA Neighboring gene uncharacterized LOC124901451 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25401 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:160498956-160499456 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:160532738-160533326 Neighboring gene uncharacterized LOC124901452 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:160554924-160556123 Neighboring gene solute carrier family 22 member 1

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • calcineurin like EF-hand protein 1 pseudogene
    • calcium binding protein P22 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003288.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL353625

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      160093082..160096212
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      161339239..161342371
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)