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    LINC00515 long intergenic non-protein coding RNA 515 [ Homo sapiens (human) ]

    Gene ID: 282566, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00515provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 515provided by HGNC
    Primary source
    HGNC:HGNC:16019
    See related
    Ensembl:ENSG00000260583 AllianceGenome:HGNC:16019
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    PRED21; C21orf71
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    Genomic context

    See LINC00515 in Genome Data Viewer
    Location:
    21q21.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (25582775..25583224, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (23940339..23940788, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (26955087..26955536, complement)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372753 Neighboring gene uncharacterized LOC124905059 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18306 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:26890717-26891218 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:26903379-26903482 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18307 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18308 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13225 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13226 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18309 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13227 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13228 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13229 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18310 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18311 Neighboring gene MIR155 host gene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18312 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18313 Neighboring gene microRNA 155 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18314 Neighboring gene mitochondrial ribosomal protein L39 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13230 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18315 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 13231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr21:27012080-27012580 Neighboring gene uncharacterized LOC124905001 Neighboring gene RNA guanylyltransferase and 5'-phosphatase pseudogene 1 Neighboring gene junctional adhesion molecule 2

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024092.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AF086441, AP000223
      Related
      ENST00000567517.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      25582775..25583224 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      23940339..23940788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)