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    LINC02720 long intergenic non-protein coding RNA 2720 [ Homo sapiens (human) ]

    Gene ID: 101928944, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC02720provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2720provided by HGNC
    Primary source
    HGNC:HGNC:54237
    See related
    Ensembl:ENSG00000255178 AllianceGenome:HGNC:54237
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.1) See more
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    Genomic context

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    See LINC02720 in Genome Data Viewer
    Location:
    11q14.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (80751200..80762803, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (80685957..80697572, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (80462243..80473846, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene ARF like GTPase 6 interacting protein 1 pseudogene 3 Neighboring gene uncharacterized LOC105369409 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5330 Neighboring gene COX6A1 pseudogene 4 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:81131543-81132356 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:81132357-81133168 Neighboring gene NANOG hESC enhancer GRCh37_chr11:81154282-81154783 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:81164979-81165480 Neighboring gene MT-CO3 pseudogene 25

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120570.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AY726583
      Related
      ENST00000526840.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      80751200..80762803 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      80685957..80697572 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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