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    LINC00443 long intergenic non-protein coding RNA 443 [ Homo sapiens (human) ]

    Gene ID: 100874173, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC00443provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 443provided by HGNC
    Primary source
    HGNC:HGNC:42780
    See related
    Ensembl:ENSG00000272274 AllianceGenome:HGNC:42780
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in gall bladder (RPKM 2.6), stomach (RPKM 2.6) and 1 other tissue See more
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    Genomic context

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    See LINC00443 in Genome Data Viewer
    Location:
    13q33.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (106653880..106672180)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (105874217..105892516)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (107306228..107324528)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene arginine and glutamate rich 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:107219841-107220751 Neighboring gene ARGLU1 divergent transcript Neighboring gene ATP synthase membrane subunit c locus 1 pseudogene 5 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:107333230-107333830 Neighboring gene uncharacterized LOC107984627 Neighboring gene uncharacterized LOC105370349 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:107447980-107448862

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_047026.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL442127, BG205531, BX117718, DB312066
      Related
      ENST00000421601.3

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      106653880..106672180
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      105874217..105892516
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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