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    LINC01343 long intergenic non-protein coding RNA 1343 [ Homo sapiens (human) ]

    Gene ID: 339442, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01343provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1343provided by HGNC
    Primary source
    HGNC:HGNC:50553
    See related
    Ensembl:ENSG00000237290 AllianceGenome:HGNC:50553
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01343 in Genome Data Viewer
    Location:
    1p34.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (38209034..38214767, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (38076242..38081975, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (38674706..38680439, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene MIR3659 host gene Neighboring gene VISTA enhancer hs238 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38579645-38580510 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38581621-38582121 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38582797-38583340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38583341-38583883 Neighboring gene microRNA 3659 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38590116-38590297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38594298-38594798 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38605789-38606702 Neighboring gene uncharacterized LOC105378654 Neighboring gene long intergenic non-protein coding RNA 2786 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 788 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 790 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 792 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 791 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 789 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38671184-38671684 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38704546-38705076 Neighboring gene VISTA enhancer hs1001 Neighboring gene VISTA enhancer hs2088 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:38736051-38736648 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:38736899-38737076 Neighboring gene uncharacterized LOC105378657 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:38827443-38827961 Neighboring gene VISTA enhancer hs1546 Neighboring gene tubulin beta 6 class V pseudogene 1 Neighboring gene RNA, U6 small nuclear 753, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038928.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL390839, BC042675, BI827914
      Related
      ENST00000431311.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      38209034..38214767 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      38076242..38081975 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)