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    LSAMP-AS1 LSAMP antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 101926903, updated on 22-Oct-2024

    Summary

    Official Symbol
    LSAMP-AS1provided by HGNC
    Official Full Name
    LSAMP antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:40350
    See related
    Ensembl:ENSG00000240922 AllianceGenome:HGNC:40350
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LSAMP-AS1 in Genome Data Viewer
    Location:
    3q13.31
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (116360024..116370085)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (119080259..119090321)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (116078871..116088932)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124906269 Neighboring gene limbic system associated membrane protein Neighboring gene uncharacterized LOC124909414 Neighboring gene NANOG hESC enhancer GRCh37_chr3:115709155-115709940 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20287 Neighboring gene NANOG hESC enhancer GRCh37_chr3:115809463-115809964 Neighboring gene uncharacterized LOC105374052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:115917016-115917516 Neighboring gene NANOG hESC enhancer GRCh37_chr3:115975635-115976191 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr3:115978423-115979314 Neighboring gene MPRA-validated peak4776 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr3:116065268-116065439 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:116079173-116079763 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:116110286-116110815 Neighboring gene NANOG hESC enhancer GRCh37_chr3:116238426-116238927 Neighboring gene long intergenic non-protein coding RNA 903 Neighboring gene RNA, 7SL, cytoplasmic 582, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109998.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX110108
      Related
      ENST00000490351.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      116360024..116370085
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      119080259..119090321
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)