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    msp-78 [ Caenorhabditis elegans ]

    Gene ID: 177814, updated on 22-Aug-2024

    Summary

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    Official Symbol
    msp-78
    Primary source
    WormBase:WBGene00003465
    Locus tag
    CELE_T13F2.11
    See related
    AllianceGenome:WB:WBGene00003465
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cytoplasm; cytoskeleton; and pseudopodium. Is expressed in gonad; oocyte; and sperm. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: IV
    Exon count:
    1
    Sequence:
    Chromosome: IV; NC_003282.8 (9770046..9770429)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene Major sperm protein 77/79 Neighboring gene pseudo Neighboring gene Caveolin;Caveolin-1 Neighboring gene Small Nuclear RNA (snRNA) Associated protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for phosphorylation in the MSP cytoskeletal filaments of amoeboid spermatozoa. Fraire-Zamora JJ, et al. Int J Biochem Mol Biol, 2011. PMID 22003439, Free PMC Article
    2. Genomic organization of major sperm protein genes and pseudogenes in the nematode Caenorhabditis elegans. Ward S, et al. J Mol Biol, 1988 Jan 5. PMID 3351915
    3. Clustered organization of reproductive genes in the C. elegans genome. Miller MA, et al. Curr Biol, 2004 Jul 27. PMID 15268860
    4. The RNA-binding protein repertoire of Arabidopsis thaliana. Marondedze C, et al. Sci Rep, 2016 Jul 11. PMID 27405932, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in pseudopodium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Major sperm protein 78
    NP_501742.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      9770046..9770429
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069341.6 → NP_501742.1  Major sperm protein 78 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501742.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94053
      Conserved Domains (1) summary
      pfam00635
      Location:9 → 114
      Motile_Sperm; MSP (Major sperm protein) domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94053.3

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