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    LOC728739 programmed cell death 2 pseudogene [ Homo sapiens (human) ]

    Gene ID: 728739, updated on 17-Sep-2024

    Summary

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    Gene symbol
    LOC728739
    Gene description
    programmed cell death 2 pseudogene
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC728739 in Genome Data Viewer
    Location:
    12q23.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (107903150..107903771, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (107867272..107867893, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (108296927..108297548, complement)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ret finger protein like 2 pseudogene Neighboring gene ret finger protein like 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4824 Neighboring gene uncharacterized LOC105369964 Neighboring gene NANOG hESC enhancer GRCh37_chr12:108434034-108434567 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24094 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6958 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4825 Neighboring gene WSC domain containing 2 Neighboring gene uncharacterized LOC124903076

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. Navarini AA, et al. Nat Commun, 2014 Jun 13. PMID 24927181
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
    EBI GWAS Catalog

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037629.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BE018697, DA161738

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      107903150..107903771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      107867272..107867893 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_021700.1: Suppressed sequence

      Description
      NG_021700.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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