U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC105372645 uncharacterized LOC105372645 [ Homo sapiens (human) ]

    Gene ID: 105372645, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC105372645
    Gene description
    uncharacterized LOC105372645
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 18.3) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC105372645 in Genome Data Viewer
    Location:
    20q13.13
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (48471342..48473330)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (50240759..50242794)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 494 Neighboring gene uncharacterized LOC105372643 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47034597-47035373 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47054573-47055079 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47083129-47083690 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18018 Neighboring gene uncharacterized LOC107985439 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18019 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18020 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18021 Neighboring gene MPRA-validated peak4239 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:47118417-47119102 Neighboring gene RNA, U7 small nuclear 144 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      48471342..48473330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_936815.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      50240759..50242794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007089717.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials