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    LINC01116 long intergenic non-protein coding RNA 1116 [ Homo sapiens (human) ]

    Gene ID: 375295, updated on 15-Oct-2024

    Summary

    Official Symbol
    LINC01116provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1116provided by HGNC
    Primary source
    HGNC:HGNC:49259
    See related
    Ensembl:ENSG00000163364 AllianceGenome:HGNC:49259
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    TALNEC2
    Expression
    Broad expression in ovary (RPKM 6.9), adrenal (RPKM 5.0) and 15 other tissues See more
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    Genomic context

    See LINC01116 in Genome Data Viewer
    Location:
    2q31.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (176611437..176637609, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (177093539..177119723, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (177476165..177502337, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124907910 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:177453489-177454688 Neighboring gene microRNA 1246 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:177485641-177486840 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12138 Neighboring gene VISTA enhancer hs248 Neighboring gene long intergenic non-protein coding RNA 1117 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12139 Neighboring gene RNA, U6atac small nuclear 14, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Markers

    Other Names

    • Tumor associated lncRNA expressed in chromosome 2

    Clone Names

    • AC017048.3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040001.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017048, KF456744
      Related
      ENST00000703418.1
    2. NR_188021.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017048, KF456744
    3. NR_188022.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017048, KF456744
      Related
      ENST00000695928.2
    4. NR_188023.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC017048, KF456744

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      176611437..176637609 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      177093539..177119723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)