Ss18l2 SS18 like 2 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Ss18l2provided by RGD
Official Full Name: SS18 like 2provided by RGD
Primary source: RGD:1590139
See related: Ensembl:ENSRNOG00000047853 AllianceGenome:RGD:1590139
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable transcription coactivator activity. Predicted to be involved in positive regulation of dendrite morphogenesis and positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SS18L2 (SS18 like 2). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Muscle (RPKM 550.7), Heart (RPKM 533.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 8q32

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	8	NC_086026.1 (130252774..130255388)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	8	NC_051343.1 (121375263..121377877)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	8	NC_005107.4 (130350504..130353126)

Chromosome 8 - NC_086026.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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General protein information

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Preferred Names: SS18-like protein 2

Names: synovial sarcoma translocation gene on chromosome 18-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001398699.1 → NP_001385628.1 SS18-like protein 2

Status: VALIDATED

Source sequence(s)

JAXUCZ010000008

UniProtKB/TrEMBL

A6I451, A6I452, M0R551

Related

ENSRNOP00000064507.1, ENSRNOT00000073376.3

Conserved Domains (1) summary

pfam05030
Location:14 → 71

SSXT; SSXT protein (N-terminal region)